PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01022081001
Common NameVIT_07s0031g00220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 491aa    MW: 54514.3 Da    PI: 7.1629
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01022081001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.2e-17137186155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  GSVIVT01022081001 137 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 186
                        78*******************......55************************997 PP

2AP243.96.1e-14229279155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  GSVIVT01022081001 229 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 279
                        89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-9137186IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-15137195IPR016177DNA-binding domain
SMARTSM003807.1E-32138200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-17138194IPR001471AP2/ERF domain
CDDcd000186.91E-11138193No hitNo description
PROSITE profilePS5103217.701138194IPR001471AP2/ERF domain
CDDcd000181.67E-24229289No hitNo description
PfamPF008471.3E-9229279IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-17229289IPR016177DNA-binding domain
SMARTSM003804.2E-31230293IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-16230287IPR001471AP2/ERF domain
PROSITE profilePS5103215.461230287IPR001471AP2/ERF domain
PRINTSPR003674.5E-6231242IPR001471AP2/ERF domain
PRINTSPR003674.5E-6269289IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MWDLNDSPDQ RRDDESEGCS SQKTSNSSSS AVVIEDGSDE EDGERGQRKR SSKIFGFSVT  60
HEDEGEPPVT RQFFPMEESE MGTTSCGGAA AFPRAHWVGV KFCQSEPLNT AGVATAKSLE  120
ASQPLKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA  180
AIKFRGVEAD INFSLEDYEE DLKQMGNLTK EEFVHVLRRQ STGFPRGSSK YRGVTLHKCG  240
RWEARMGQFL GKKYVYLGLF DTEIEAARAY DKAAIKCNGK EAVTNFDPSI YENELNSSGN  300
AADHNLDLSL GGSASKQNNL ELGDDSQVVT MDQHSVGMSF EADWRSRGFR PKQEACKSDG  360
DALRRNGYNE METMQLLSHT HLQSPAALKP GEMYRYGQFR RAGETQMLHI LPPQLSSPNY  420
QIQFPSSSNG GRIAVNGGDL SLATNHQQWQ SGPPQLFATA AASSGFPPQM IRPNQQWPQK  480
NGFHSLIRPS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.118620.0bud| flower| fruit| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8099430.0FJ809943.1 Vitis vinifera cultivar Xiangyue transcription factor APETALA2 (AP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652782.10.0PREDICTED: transcription factor APETALA2 isoform X1
SwissprotP479271e-134AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLF6H4H70.0F6H4H7_VITVI; Putative uncharacterized protein
STRINGVIT_07s0031g00220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-128AP2 family protein